C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 7 (herpes virus-associated)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344836 USP7-001 ENSG00000187555 9606 - 16:8892094-8963484 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344836
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344836 4.192±0.00 6.097±0.00 1.943±0.00 4.554±2.46 3.667±0.61 5.204±0.00 2.367±0.00 2.761±0.00 3.880±2.50 1.946±0.46 2.973±1.36 6.862±3.36 4.385±0.88 4.602±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EV CIL_0000EV_0001 CGP 16:8852942-8964514
CIL_0000EN CIL_0000EN_0001 CGP 16:8892094-9121640

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002039 IDA p53 binding
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0004221 IMP ubiquitin thiolesterase activity
GO:0004843 IMP ubiquitin-specific protease activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0006283 IMP transcription-coupled nucleotide-excision repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007275 IEA multicellular organismal development
GO:0008022 IPI protein C-terminus binding
GO:0008134 IPI transcription factor binding
GO:0008234 IEA cysteine-type peptidase activity
GO:0010216 IMP maintenance of DNA methylation
GO:0016032 IEA viral process
GO:0016579 IMP protein deubiquitination
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0051090 IDA regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160405 Usp7-001 protein_coding Mus_musculus 0 5252
ENSMUST00000161046 Usp7-002 protein_coding Mus_musculus 0 5182
ENSMUST00000160326 Usp7-003 nonsense_mediated_decay Mus_musculus 0 4745
ENSMUST00000162445 Usp7-004 processed_transcript Mus_musculus 0 4477
ENSDART00000150953 usp7-001 protein_coding Danio_rerio 0 2392
ENSDART00000024453 usp7-201 protein_coding Danio_rerio 0 2316
ENSMUST00000172505 Usp7-013 nonsense_mediated_decay Mus_musculus 0 1212
ENSMUST00000159287 Usp7-007 retained_intron Mus_musculus 0 641
ENSMUST00000162929 Usp7-005 retained_intron Mus_musculus 0 564
ENSMUST00000159281 Usp7-011 retained_intron Mus_musculus 0 331
ENSMUST00000159503 Usp7-009 retained_intron Mus_musculus 0 302
ENSMUST00000159509 Usp7-008 retained_intron Mus_musculus 0 287
ENSMUST00000159387 Usp7-006 retained_intron Mus_musculus 0 259
ENSMUST00000162141 Usp7-010 retained_intron Mus_musculus 0 228
ENSMUST00000173939 Usp7-012 retained_intron Mus_musculus 2e-37 163

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