C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344876 PCDH18-001 ENSG00000189184 9606 - 4:137518918-137532475 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLungOvaryPlacentaENST00000344876
Transcript ID Adipose Brain Breast Colon Heart Lung Ovary Placenta
ENST00000344876 3.528±0.00 0.173±0.00 1.448±0.31 1.367±0.00 0.305±0.00 0.743±0.00 0.962±0.09 0.940±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001R CIL_00001R_0001 CGP 4:137518918-138242349

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007420 ISS brain development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035931 Pcdh18-201 protein_coding Mus_musculus 0 4305

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