C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein (C3H2C3 type) 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346166 RNF6-001 ENSG00000127870 9606 - 13:26212762-26221842 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000346166
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000346166 4.831±0.00 6.282±0.00 1.087±0.00 8.514±3.13 4.306±0.00 3.933±0.63 2.514±0.69 4.084±1.77 2.916±0.74 5.449±1.28 2.278±1.50 7.189±3.59 4.039±2.62 13.674±2.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MF CIL_0004MF_0001 CGP 13:26132115-26405238

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IMP ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0030424 ISS axon
GO:0030517 ISS negative regulation of axon extension
GO:0031965 IDA nuclear membrane
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044314 IDA protein K27-linked ubiquitination
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0050681 IPI androgen receptor binding
GO:0060765 IMP regulation of androgen receptor signaling pathway
GO:0070936 ISS protein K48-linked ubiquitination
GO:0085020 IDA protein K6-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169407 Rnf6-201 protein_coding Mus_musculus 0 1482
ENSMUST00000161859 Rnf6-001 protein_coding Mus_musculus 0 1482
ENSMUST00000067837 Rnf6-003 protein_coding Mus_musculus 0 1397
ENSMUST00000162219 Rnf6-005 protein_coding Mus_musculus 0 521
ENSMUST00000161331 Rnf6-004 protein_coding Mus_musculus 0 472
ENSMUST00000161574 Rnf6-002 protein_coding Mus_musculus 0 436
ENSMUST00000117964 Gm13722-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000159074 Rnf6-007 protein_coding Mus_musculus 0 298

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