C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor binding SET domain protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000347982 NSD1-002 ENSG00000165671 9606 + 5:177134229-177295762 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000347982
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000347982 2.841±0.00 3.455±0.00 1.018±0.00 1.360±0.21 3.387±0.69 2.505±0.00 0.968±0.32 2.297±0.25 1.255±0.00 2.319±0.00 2.899±1.33 2.576±1.39 1.582±0.18 5.600±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000OQ CIL_0000OQ_0002 CGP 5:177086886-177300215
CIL_0008A2 CIL_0008A2_0001 VISTA 5:177089375-177692188
CIL_0002YK CIL_0002YK_0001 CGP 5:177133025-177303744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0003682 ISS chromatin binding
GO:0003712 IDA transcription cofactor activity
GO:0003714 ISS transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IDA:IEA zinc ion binding
GO:0010452 ISS histone H3-K36 methylation
GO:0016571 ISS histone methylation
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0030331 ISS estrogen receptor binding
GO:0034770 ISS histone H4-K20 methylation
GO:0042799 ISS histone methyltransferase activity (H4-K20 specific)
GO:0042974 ISS retinoic acid receptor binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046965 ISS retinoid X receptor binding
GO:0046966 ISS thyroid hormone receptor binding
GO:0046975 ISS histone methyltransferase activity (H3-K36 specific)
GO:0050681 IDA androgen receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099490 Nsd1-201 protein_coding Mus_musculus 0 7548

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