C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calponin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000348419 CNN2-003 ENSG00000064666 9606 + 19:1026610-1039068 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LungOvaryENST00000348419
Transcript ID Lung Ovary
ENST00000348419 4.490±0.00 32.748±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0000I1 CIL_0000I1_0001 CGP 19:1009648-1039068
CIL_0000I2 CIL_0000I2_0001 CGP 19:1026581-1065572

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005856 TAS cytoskeleton
GO:0005911 TAS cell-cell junction
GO:0005925 IDA focal adhesion
GO:0007010 TAS cytoskeleton organization
GO:0016020 IDA membrane
GO:0031032 IEA actomyosin structure organization
GO:0032970 IDA regulation of actin filament-based process
GO:0070062 IDA extracellular vesicular exosome
GO:0071260 IDA cellular response to mechanical stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105374 Cnn2-002 protein_coding Mus_musculus 0 968
ENSMUST00000004784 Cnn2-001 protein_coding Mus_musculus 0 527

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