C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein M
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000348943 HNRNPM-001 ENSG00000099783 9606 + 19:8444767-8489114 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000348943
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000348943 34.645±0.00 37.410±0.00 20.382±0.00 20.362±0.00 27.558±0.00 13.919±0.00 32.055±0.00 16.228±0.00 47.145±15.05 27.811±6.34 46.874±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NQ CIL_0002NQ_0001 CGP 19:7926718-8445041
CIL_0000UT CIL_0000UT_0001 CGP 19:7958579-8445041
CIL_0005GY CIL_0005GY_0002 CGP 19:8413270-8489114

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 IMP alternative mRNA splicing, via spliceosome
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005887 TAS integral component of plasma membrane
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016363 IDA nuclear matrix
GO:0019904 IPI protein domain specific binding
GO:0031012 IDA extracellular matrix
GO:0042382 IDA paraspeckles
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087582 Hnrnpm-002 protein_coding Mus_musculus 0 3435
ENSMUST00000139302 Hnrnpm-004 protein_coding Mus_musculus 0 2743
ENSMUST00000148178 Hnrnpm-001 protein_coding Mus_musculus 0 2682
ENSMUST00000114385 Hnrnpm-003 protein_coding Mus_musculus 0 1986
ENSMUST00000130946 Hnrnpm-008 protein_coding Mus_musculus 0 754
ENSMUST00000148258 Hnrnpm-009 protein_coding Mus_musculus 0 606
ENSMUST00000127598 Hnrnpm-005 retained_intron Mus_musculus 0 466
ENSMUST00000153608 Hnrnpm-006 retained_intron Mus_musculus 0 436

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