C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat domain 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000349139 WDR3-001 ENSG00000065183 9606 + 1:117929768-117966542 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000349139
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000349139 1.744±0.00 0.493±0.00 1.290±0.29 1.265±0.43 0.644±0.00 0.499±0.30 2.178±0.00 0.230±0.00 1.267±0.57 0.896±0.35 1.647±0.57 1.885±0.61 3.859±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HM CIL_0008HM_0001 VISTA 1:117358424-117964281
CIL_00012R CIL_00012R_0002 CGP 1:117863485-117966542

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0031965 IDA nuclear membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052120 Wdr3-001 protein_coding Mus_musculus 0 3016
ENSMUST00000146989 Wdr3-002 nonsense_mediated_decay Mus_musculus 0 1733
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.0000003 64
ENSMUST00000024742 Nfkbie-201 protein_coding Mus_musculus 0.000004 60

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