C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000350110 CNTN6-004 ENSG00000134115 9606 + 3:1092661-1403594 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLungOvaryPlacentaTestisENST00000350110
Transcript ID Brain Breast Lung Ovary Placenta Testis
ENST00000350110 0.437±0.07 0.100±0.00 0.422±0.00 0.030±0.00 0.359±0.00 0.043±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050I CIL_00050I_0001 CGP 3:196596-1404217
CIL_00050H CIL_00050H_0001 CGP 3:1092576-3057956

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007219 IEA Notch signaling pathway
GO:0007411 TAS axon guidance
GO:0007417 TAS central nervous system development
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089215 Cntn6-001 protein_coding Mus_musculus 0 4128
ENSMUST00000162872 Cntn6-004 protein_coding Mus_musculus 0 3642
ENSMUST00000161070 Cntn6-003 protein_coding Mus_musculus 0 3356
ENSMUST00000161446 Cntn6-005 protein_coding Mus_musculus 0 826
ENSMUST00000161413 Cntn6-002 retained_intron Mus_musculus 0 496

Loading