C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDGFA associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000350498 PDAP1-001 ENSG00000106244 9606 - 7:99394963-99408829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350498
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350498 47.421±0.00 90.184±0.00 4.672±0.00 6.794±0.00 25.935±16.36 8.773±0.00 13.036±10.19 21.324±17.01 12.500±7.38 36.879±0.00 25.348±17.86 70.872±43.11 57.279±6.18 33.804±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005L5 CIL_0005L5_0002 CGP 7:99325898-99394801
CIL_0004TJ CIL_0004TJ_0001 CGP 7:99374249-99408829
CIL_0005LD CIL_0005LD_0002 CGP 7:99392048-99419616

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007165 TAS signal transduction
GO:0008283 TAS cell proliferation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031627 Pdap1-001 protein_coding Mus_musculus 0 1317
ENSMUST00000123111 Pdap1-002 processed_transcript Mus_musculus 0 869
ENSMUST00000143439 Pdap1-004 retained_intron Mus_musculus 0 475
ENSMUST00000085679 Arpc1b-001 protein_coding Mus_musculus 0.0000000001 73

Loading