C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: elongator acetyltransferase complex subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000350638 ELP4-001 ENSG00000109911 9606 + 11:31509750-31783998 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350638
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350638 1.339±0.00 0.516±0.00 3.159±1.19 1.039±0.00 2.000±0.00 1.575±0.59 1.326±0.97 1.174±0.31 0.942±0.47 1.046±0.30 2.254±0.97 2.798±0.49 2.174±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JA CIL_0007JA_0001 UCNEbase 11:30717111-31639896
CIL_00096G CIL_00096G_0001 VISTA 11:31180488-31781610
CIL_0008KI CIL_0008KI_0001 VISTA 11:31301275-31902571
CIL_0007UQ CIL_0007UQ_0001 VISTA 11:31363809-31965336
CIL_0008UP CIL_0008UP_0001 VISTA 11:31463875-32065678
CIL_0007XG CIL_0007XG_0001 VISTA 11:31494904-32096873

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004402 IDA histone acetyltransferase activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006325 TAS chromatin organization
GO:0006357 TAS:IEA regulation of transcription from RNA polymerase II promoter
GO:0006368 IC transcription elongation from RNA polymerase II promoter
GO:0008023 IDA transcription elongation factor complex
GO:0008607 IDA phosphorylase kinase regulator activity
GO:0016573 IDA histone acetylation
GO:0016591 IDA DNA-directed RNA polymerase II, holoenzyme
GO:0033588 IDA:IEA Elongator holoenzyme complex
GO:0045859 IDA regulation of protein kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122965 Elp4-001 protein_coding Mus_musculus 0 1303
ENSMUST00000028588 Elp4-003 protein_coding Mus_musculus 0 754
ENSMUST00000152272 Elp4-004 retained_intron Mus_musculus 0 538
ENSMUST00000148441 Elp4-002 processed_transcript Mus_musculus 1e-33 148

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