C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phospholipase D1, phosphatidylcholine-specific
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000351298 PLD1-001 ENSG00000075651 9606 - 3:171600826-171810494 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000351298
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000351298 3.061±0.00 1.528±0.00 1.537±0.52 1.927±0.67 2.020±0.35 3.809±1.75 2.641±1.55 1.313±0.64 1.416±0.06 0.185±0.15 2.237±1.05 1.612±0.23 1.528±1.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SJ CIL_0007SJ_0001 VISTA 3:171005102-171609864
CIL_00049S CIL_00049S_0002 CGP 3:171061339-171810950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004630 IEA phospholipase D activity
GO:0005515 IPI protein binding
GO:0005765 IDA lysosomal membrane
GO:0005768 IDA endosome
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005794 IDA Golgi apparatus
GO:0006644 TAS phospholipid metabolic process
GO:0006654 TAS phosphatidic acid biosynthetic process
GO:0006655 TAS phosphatidylglycerol biosynthetic process
GO:0006935 TAS chemotaxis
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007265 TAS Ras protein signal transduction
GO:0008152 IEA metabolic process
GO:0016020 IDA membrane
GO:0016042 IEA lipid catabolic process
GO:0035091 IEA phosphatidylinositol binding
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0050830 IEA defense response to Gram-positive bacterium
GO:0070290 IEA N-acylphosphatidylethanolamine-specific phospholipase D activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000123539 Pld1-004 nonsense_mediated_decay Mus_musculus 0 3282
ENSMUST00000067757 Pld1-002 protein_coding Mus_musculus 0 1688
ENSMUST00000120834 Pld1-001 protein_coding Mus_musculus 0 1685
ENSMUST00000148827 Pld1-003 protein_coding Mus_musculus 0 1149
ENSMUST00000126594 Pld1-009 protein_coding Mus_musculus 0 612
ENSDART00000078686 pld1a-201 protein_coding Danio_rerio 0 435
ENSDART00000133623 pld1a-001 protein_coding Danio_rerio 0 429
ENSMUST00000131842 Pld1-006 retained_intron Mus_musculus 0 361

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