C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 88
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000351808 IFT88-001 ENSG00000032742 9606 + 13:20567069-20691362 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000351808
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000351808 1.249±0.00 2.351±0.00 3.692±0.00 1.341±0.69 1.077±0.03 2.248±0.19 0.698±0.42 3.771±2.19 1.304±0.83 2.121±0.12 0.726±0.69 2.843±1.43 0.921±0.39 16.067±1.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SM CIL_0003SM_0001 CGP 13:20403667-20691437
CIL_0003SN CIL_0003SN_0001 CGP 13:20567069-20723098

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005814 ISS centriole
GO:0005929 ISS cilium
GO:0030992 ISS intraciliary transport particle B
GO:0031514 ISS motile cilium
GO:0036064 ISS ciliary basal body
GO:0060271 ISS cilium morphogenesis
GO:1902017 ISS regulation of cilium assembly
GO:2000785 ISS regulation of autophagic vacuole assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122063 Ift88-001 protein_coding Mus_musculus 0 2863
ENSMUST00000154492 Ift88-002 retained_intron Mus_musculus 0 1670
ENSMUST00000171682 Ift88-005 nonsense_mediated_decay Mus_musculus 0 571
ENSMUST00000150296 Ift88-003 nonsense_mediated_decay Mus_musculus 0 302

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