C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S-phase kinase-associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000353411 SKP1-001 ENSG00000113558 9606 - 5:134148935-134177038 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000353411
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000353411 4.009±0.00 5.964±0.00 1.887±0.00 9.523±3.93 3.873±1.47 3.258±1.25 1.126±0.00 3.732±2.24 2.411±0.52 4.316±0.61 2.190±0.96 3.859±0.68 7.127±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GN CIL_0000GN_0002 CGP 5:134114711-134177038
CIL_00089W CIL_00089W_0001 VISTA 5:134136326-134739629

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007219 TAS Notch signaling pathway
GO:0016032 TAS viral process
GO:0016567 IDA protein ubiquitination
GO:0019005 IDA SCF ubiquitin ligase complex
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031146 IDA SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031467 IDA Cul7-RING ubiquitin ligase complex
GO:0031519 IDA PcG protein complex
GO:0035518 IDA histone H2A monoubiquitination
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037324 Skp1a-001 protein_coding Mus_musculus 0 994
ENSMUST00000109072 Skp1a-002 protein_coding Mus_musculus 0 987
ENSMUST00000116595 Skp1a-005 nonsense_mediated_decay Mus_musculus 0 651
ENSMUST00000119054 Gm12988-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000147684 Skp1a-004 nonsense_mediated_decay Mus_musculus 0 520
ENSDART00000008454 skp1-001 protein_coding Danio_rerio 0 483
ENSMUST00000166537 Skp1a-006 protein_coding Mus_musculus 0 254
ENSMUST00000093121 Skp1a-003 retained_intron Mus_musculus 5e-35 156

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