C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355014 SEMA4A-002 ENSG00000196189 9606 + 1:156150019-156177744 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000355014
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000355014 0.804±0.00 1.808±0.00 3.092±0.60 3.304±0.00 1.362±0.00 0.066±0.00 6.204±0.00 0.734±0.00 3.345±2.21 0.605±0.00 0.574±0.15 2.044±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0004872 IEA receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005886 TAS plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0007411 TAS axon guidance
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165898 Sema4a-201 protein_coding Mus_musculus 0 2239
ENSMUST00000169222 Sema4a-203 protein_coding Mus_musculus 0 2193
ENSMUST00000166237 Sema4a-202 protein_coding Mus_musculus 0 2193
ENSMUST00000029700 Sema4a-001 protein_coding Mus_musculus 0 2193
ENSMUST00000107531 Sema4a-002 protein_coding Mus_musculus 0 1768
ENSMUST00000149145 Sema4a-014 retained_intron Mus_musculus 0 1389
ENSMUST00000127436 Sema4a-004 protein_coding Mus_musculus 0 734
ENSMUST00000184487 Sema4a-008 nonsense_mediated_decay Mus_musculus 0 697
ENSMUST00000147200 Sema4a-005 protein_coding Mus_musculus 0 595
ENSMUST00000185137 Sema4a-007 nonsense_mediated_decay Mus_musculus 0 486
ENSMUST00000184876 Sema4a-009 nonsense_mediated_decay Mus_musculus 0 462
ENSMUST00000135732 Sema4a-006 retained_intron Mus_musculus 0 425
ENSMUST00000135539 Sema4a-015 retained_intron Mus_musculus 3e-33 148
ENSMUST00000156108 Sema4a-016 retained_intron Mus_musculus 3e-33 148

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