C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2bk
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356950 HIST1H2BK-001 ENSG00000197903 9606 - 6:27146418-27146798 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000356950
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000356950 3.283±0.00 1.365±0.00 1.225±0.00 12.371±7.75 17.022±10.01 2.079±0.63 4.466±2.28 13.966±2.78 10.348±0.50 0.613±0.11 12.520±9.48 8.805±3.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096D CIL_00096D_0001 VISTA 6:27032592-27634418
CIL_0000UC CIL_0000UC_0007 CGP 6:27146418-27147515

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0002227 IDA innate immune response in mucosa
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005615 IDA extracellular space
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0019731 IDA antibacterial humoral response
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0050830 IDA defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018246 Hist1h2bc-001 protein_coding Mus_musculus 0 551
ENSMUST00000110467 Hist1h2br-001 protein_coding Mus_musculus 0 540
ENSMUST00000105106 Hist1h2bf-001 protein_coding Mus_musculus 0 540
ENSMUST00000079251 Hist1h2bg-001 protein_coding Mus_musculus 0 540
ENSMUST00000110469 Hist1h2bq-001 protein_coding Mus_musculus 0 540
ENSMUST00000180288 Hist1h2br-201 protein_coding Mus_musculus 0 538
ENSMUST00000110455 Hist1h2bk-001 protein_coding Mus_musculus 0 538
ENSMUST00000091749 Hist1h2bq-201 protein_coding Mus_musculus 0 538
ENSMUST00000091709 Hist1h2bn-001 protein_coding Mus_musculus 0 534
ENSMUST00000051091 Hist1h2be-001 protein_coding Mus_musculus 0 534
ENSMUST00000091704 Hist1h2be-002 protein_coding Mus_musculus 0 534
ENSMUST00000091756 Hist1h2bl-001 protein_coding Mus_musculus 0 534
ENSMUST00000078156 Hist1h2bh-001 protein_coding Mus_musculus 0 529
ENSMUST00000110452 Hist1h2bj-001 protein_coding Mus_musculus 0 529
ENSMUST00000110476 Hist1h2bm-001 protein_coding Mus_musculus 0 529
ENSMUST00000102982 Hist1h2bp-001 protein_coding Mus_musculus 0 507
ENSMUST00000110473 Hist1h2bp-002 protein_coding Mus_musculus 0 505
ENSMUST00000099703 Hist1h2bb-001 protein_coding Mus_musculus 0 501
ENSMUST00000177113 Hist2h2bb-001 protein_coding Mus_musculus 0 473
ENSMUST00000117835 Gm12957-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000078267 Hist3h2ba-001 protein_coding Mus_musculus 0 440
ENSMUST00000117558 Hist3h2bb-ps-001 processed_pseudogene Mus_musculus 0 435
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 431
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 420
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 420
ENSMUST00000090781 Hist2h2be-001 protein_coding Mus_musculus 0 409
ENSMUST00000052776 Hist1h2ba-001 protein_coding Mus_musculus 0 405
ENSDART00000152735 zgc:171759-001 protein_coding Danio_rerio 0 355
ENSDART00000136970 zgc:171759-210 protein_coding Danio_rerio 0 322
ENSMUST00000051089 Hist2h2bb-201 protein_coding Mus_musculus 0 270

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