C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein interacting with PRKCA 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356976 PICK1-002 ENSG00000100151 9606 + 22:38057407-38075701 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356976
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356976 2.253±0.00 3.942±0.00 0.100±0.00 7.999±6.52 5.208±0.00 1.423±0.65 6.278±0.00 9.760±0.00 4.893±0.00 3.785±0.00 7.221±0.00 5.137±2.67 9.818±3.43 10.454±5.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0001 VISTA 22:37683926-38284300
CIL_0008KJ CIL_0008KJ_0001 VISTA 22:37685616-38286450
CIL_0008BX CIL_0008BX_0001 VISTA 22:37696030-38296592
CIL_0008KA CIL_0008KA_0001 VISTA 22:37698338-38299192
CIL_00082J CIL_00082J_0001 VISTA 22:37733233-38334508
CIL_0008C1 CIL_0008C1_0001 VISTA 22:37746133-38346872
CIL_00082K CIL_00082K_0001 VISTA 22:37750385-38350990
CIL_0008MM CIL_0008MM_0001 VISTA 22:37872841-38473542
CIL_0003QD CIL_0003QD_0001 CGP 22:37970686-38075701
CIL_0003QE CIL_0003QE_0001 CGP 22:38056311-38084093

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001664 ISS G-protein coupled receptor binding
GO:0002092 ISS positive regulation of receptor internalization
GO:0005080 ISS protein kinase C binding
GO:0005102 ISS receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA:IEA cytoplasm
GO:0005794 ISS Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0006200 ISS ATP catabolic process
GO:0006468 ISS protein phosphorylation
GO:0006890 NAS retrograde vesicle-mediated transport, Golgi to ER
GO:0007205 IDA protein kinase C-activating G-protein coupled receptor signaling pathway
GO:0007268 TAS synaptic transmission
GO:0008022 IPI protein C-terminus binding
GO:0015844 IDA monoamine transport
GO:0016887 ISS ATPase activity
GO:0019899 IPI enzyme binding
GO:0019904 IEA:ISS protein domain specific binding
GO:0021782 ISS glial cell development
GO:0030054 IEA cell junction
GO:0030666 TAS endocytic vesicle membrane
GO:0034316 ISS negative regulation of Arp2/3 complex-mediated actin nucleation
GO:0036294 ISS cellular response to decreased oxygen levels
GO:0042149 ISS cellular response to glucose starvation
GO:0042734 IDA presynaptic membrane
GO:0042802 ISS identical protein binding
GO:0043005 ISS neuron projection
GO:0043045 NAS DNA methylation involved in embryo development
GO:0043046 TAS DNA methylation involved in gamete generation
GO:0043113 ISS receptor clustering
GO:0045161 TAS neuronal ion channel clustering
GO:0045202 ISS synapse
GO:0045211 IEA postsynaptic membrane
GO:0046872 IEA metal ion binding
GO:0048471 ISS perinuclear region of cytoplasm
GO:0051015 ISS actin filament binding
GO:0060292 ISS long term synaptic depression
GO:0071933 ISS Arp2/3 complex binding
GO:0097061 ISS dendritic spine organization
GO:0097062 ISS dendritic spine maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018295 Pick1-001 protein_coding Mus_musculus 0 1879
ENSMUST00000166155 Pick1-012 protein_coding Mus_musculus 0 1744
ENSMUST00000163571 Pick1-002 protein_coding Mus_musculus 0 1744
ENSMUST00000053926 Pick1-003 protein_coding Mus_musculus 0 1550
ENSMUST00000169548 Pick1-005 retained_intron Mus_musculus 0 920
ENSMUST00000168513 Pick1-010 processed_transcript Mus_musculus 0 656
ENSMUST00000171365 Pick1-009 retained_intron Mus_musculus 0 573
ENSMUST00000165609 Pick1-004 retained_intron Mus_musculus 0 551
ENSMUST00000171581 Pick1-008 processed_transcript Mus_musculus 0 542
ENSMUST00000113954 Pick1-011 processed_transcript Mus_musculus 0 497
ENSMUST00000172162 Pick1-007 processed_transcript Mus_musculus 0 390
ENSMUST00000166417 Pick1-006 processed_transcript Mus_musculus 0 339

Loading