C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-CoA synthetase short-chain family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360596 ACSS2-001 ENSG00000131069 9606 + 20:34876435-34927962 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000360596
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000360596 19.543±0.00 15.037±0.00 4.752±4.03 38.674±31.96 10.188±0.58 3.063±0.00 13.390±4.83 9.359±4.57 4.742±2.75 4.024±1.31 7.180±2.04 3.902±1.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BC CIL_0005BC_0001 CGP 20:34844720-34927962
CIL_0005BF CIL_0005BF_0001 CGP 20:34872146-34955817

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0003987 IDA:IEA acetate-CoA ligase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006069 TAS ethanol oxidation
GO:0006805 TAS xenobiotic metabolic process
GO:0008152 IEA metabolic process
GO:0008610 IMP lipid biosynthetic process
GO:0016208 IC:IEA AMP binding
GO:0019427 IEA acetyl-CoA biosynthetic process from acetate
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029135 Acss2-001 protein_coding Mus_musculus 0 2885
ENSMUST00000065973 Acss2-008 protein_coding Mus_musculus 0 2665
ENSMUST00000103142 Acss2-003 protein_coding Mus_musculus 0 1757
ENSMUST00000133654 Acss2-004 nonsense_mediated_decay Mus_musculus 0 1753
ENSMUST00000151781 Acss2-002 protein_coding Mus_musculus 0 715
ENSMUST00000131054 Acss2-005 retained_intron Mus_musculus 0 601
ENSMUST00000149788 Acss2-006 retained_intron Mus_musculus 0 508
ENSMUST00000143169 Acss2-007 retained_intron Mus_musculus 0 219

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