C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A2/B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360787 HNRNPA2B1-006 ENSG00000122566 9606 - 7:26190125-26200746 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastMuscleENST00000360787
Transcript ID Adipose Breast Muscle
ENST00000360787 28.841±0.00 37.372±0.00 31.143±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q3 CIL_0008Q3_0001 VISTA 7:25714231-26318034
CIL_000874 CIL_000874_0001 VISTA 7:25760923-26361842
CIL_0002CP CIL_0002CP_0001 CGP 7:26152240-26201529
CIL_0009DE CIL_0009DE_0001 VISTA 7:26185042-26786016
CIL_0002CO CIL_0002CO_0001 CGP 7:26189927-26213356

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 IDA mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0030529 IDA ribonucleoprotein complex
GO:0043047 IDA single-stranded telomeric DNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0050658 IDA RNA transport
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090002 Hnrnpa2b1-202 protein_coding Mus_musculus 0 2139
ENSMUST00000114459 Hnrnpa2b1-203 protein_coding Mus_musculus 0 1561
ENSMUST00000171003 Gm5778-001 processed_pseudogene Mus_musculus 0 1321
ENSMUST00000069949 Hnrnpa2b1-201 protein_coding Mus_musculus 0 1055

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