C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 2 (beta)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360958 TPM2-002 ENSG00000198467 9606 - 9:35682930-35689922 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartMuscleOvaryTestisENST00000360958
Transcript ID Bladder Brain Breast Heart Muscle Ovary Testis
ENST00000360958 1.097±0.00 5.393±3.49 639.662±0.00 174.846±129.47 2174.025±147.66 2.791±0.00 87.146±72.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BY CIL_0007BY_0001 CGP 9:35673856-35691020
CIL_0007BX CIL_0007BX_0001 CGP 9:35681992-35732395

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005829 TAS cytosol
GO:0005862 TAS muscle thin filament tropomyosin
GO:0006936 TAS muscle contraction
GO:0008307 TAS structural constituent of muscle
GO:0030049 TAS muscle filament sliding
GO:0043462 IDA regulation of ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107913 Tpm2-201 protein_coding Mus_musculus 0 1375
ENSMUST00000030184 Tpm2-002 protein_coding Mus_musculus 0 1214
ENSMUST00000107914 Tpm2-001 protein_coding Mus_musculus 0 1009
ENSMUST00000150262 Tpm2-003 processed_transcript Mus_musculus 0 870
ENSDART00000039657 tpma-201 protein_coding Danio_rerio 0 725
ENSDART00000125892 TPM1-204 protein_coding Danio_rerio 0 647
ENSDART00000098875 tpm2-001 protein_coding Danio_rerio 0 640
ENSMUST00000030185 Tpm1-002 protein_coding Mus_musculus 0 619
ENSMUST00000113685 Tpm1-003 protein_coding Mus_musculus 0 619
ENSMUST00000113693 Tpm1-011 protein_coding Mus_musculus 0 568
ENSMUST00000113687 Tpm1-012 protein_coding Mus_musculus 0 566
ENSMUST00000113707 Tpm1-001 protein_coding Mus_musculus 0 564
ENSDART00000140580 tpm2-003 protein_coding Danio_rerio 0 532
ENSMUST00000050905 Tpm1-004 protein_coding Mus_musculus 0 531
ENSDART00000054763 tpma-202 protein_coding Danio_rerio 0 523
ENSMUST00000150592 Tpm2-004 protein_coding Mus_musculus 0 501
ENSDART00000014851 TPM1-203 protein_coding Danio_rerio 0 479
ENSMUST00000113697 Tpm1-006 protein_coding Mus_musculus 0 475
ENSMUST00000034928 Tpm1-008 protein_coding Mus_musculus 0 451
ENSDART00000121680 TPM1-202 protein_coding Danio_rerio 0 442
ENSMUST00000113705 Tpm1-007 protein_coding Mus_musculus 0 436
ENSMUST00000131279 Tpm1-018 processed_transcript Mus_musculus 0 418
ENSMUST00000129466 Tpm1-019 retained_intron Mus_musculus 0 412
ENSMUST00000113690 Tpm1-013 protein_coding Mus_musculus 0 392
ENSMUST00000113686 Tpm1-014 protein_coding Mus_musculus 0 390
ENSMUST00000113695 Tpm1-016 protein_coding Mus_musculus 0 387
ENSMUST00000113684 Tpm1-020 protein_coding Mus_musculus 0 355
ENSMUST00000113701 Tpm1-010 protein_coding Mus_musculus 0 348
ENSDART00000131098 TPM1-201 protein_coding Danio_rerio 0 331
ENSMUST00000129733 Tpm1-009 nonsense_mediated_decay Mus_musculus 0 318
ENSMUST00000113689 Tpm1-021 protein_coding Mus_musculus 0 303
ENSMUST00000113696 Tpm1-015 protein_coding Mus_musculus 0 298
ENSMUST00000133355 Tpm2-005 processed_transcript Mus_musculus 0 261

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