C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lamin A/C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361308 LMNA-202 ENSG00000160789 9606 + 1:156114670-156137764 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361308
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361308 91.910±0.00 79.567±0.00 20.846±0.00 113.046±0.00 39.288±0.00 36.170±0.00 48.823±0.00 20.893±0.00 91.000±0.00 54.549±0.00 689.989±0.00 85.162±48.72 48.288±8.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029699 Lmna-001 protein_coding Mus_musculus 0 1901
ENSMUST00000120377 Lmna-002 protein_coding Mus_musculus 0 1877
ENSMUST00000036252 Lmna-003 protein_coding Mus_musculus 0 1236
ENSMUST00000149068 Lmna-004 protein_coding Mus_musculus 0 688
ENSMUST00000147537 Lmna-006 retained_intron Mus_musculus 4e-39 167
ENSMUST00000135494 Lmna-005 processed_transcript Mus_musculus 2e-31 141

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