C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: distal-less homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361725 DLX1-001 ENSG00000144355 9606 + 2:172085226-172089677 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000361725
Transcript ID Testis
ENST00000361725 0.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RB CIL_0007RB_0001 VISTA 2:171663732-172264836
CIL_0008A7 CIL_0008A7_0001 VISTA 2:171663843-172264792
CIL_0007RB CIL_0007RB_0002 VISTA 2:171664837-172267307
CIL_0008C9 CIL_0008C9_0001 VISTA 2:171771791-172373521
CIL_0009AY CIL_0009AY_0001 VISTA 2:171783051-172384518
CIL_0008AZ CIL_0008AZ_0001 VISTA 2:171791151-172392324
CIL_0008B0 CIL_0008B0_0001 VISTA 2:171792917-172394318
CIL_0004K6 CIL_0004K6_0001 CGP 2:171999583-172089677
CIL_0007JJ CIL_0007JJ_002B UCNEbase 2:172044408-172094161
CIL_00062L CIL_00062L_0002 CGP 2:172084740-172102900

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IEA nucleus
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0009954 IEA proximal/distal pattern formation
GO:0021544 IEA subpallium development
GO:0021766 IEA hippocampus development
GO:0021879 IEA forebrain neuron differentiation
GO:0021882 IEA regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0021892 IEA cerebral cortex GABAergic interneuron differentiation
GO:0021893 IEA cerebral cortex GABAergic interneuron fate commitment
GO:0030154 IEA cell differentiation
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0043524 IEA negative regulation of neuron apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0045746 IEA negative regulation of Notch signaling pathway
GO:0048706 IEA embryonic skeletal system development
GO:0048715 IEA negative regulation of oligodendrocyte differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037119 Dlx1-001 protein_coding Mus_musculus 0 1729
ENSMUST00000152711 Dlx1-004 protein_coding Mus_musculus 0 979
ENSMUST00000145088 Dlx1-003 retained_intron Mus_musculus 0 905
ENSMUST00000145444 Dlx1-002 nonsense_mediated_decay Mus_musculus 0 789
ENSMUST00000126400 Dlx1-005 protein_coding Mus_musculus 0 702
ENSMUST00000172629 Dlx1-006 retained_intron Mus_musculus 0 566

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