Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	caldesmon 1
ENST00000361901	CALD1-001	ENSG00000122786	9606	+	7:134779678-134970641	protein_coding

Expression Patterns

Transcript ID	Adipose	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000361901	44.467±0.00	3.785±0.00	0.458±0.00	27.399±8.58	11.404±0.00	6.953±5.53	21.032±18.13	42.481±29.72	37.414±29.01	6.821±0.00	56.677±33.59	94.096±34.75	20.435±0.00

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_00024W	CIL_00024W_0002	CGP	7:134646808-134970728
CIL_0002H0	CIL_0002H0_0001	CGP	7:134744252-135147963

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0003779	IEA	actin binding
GO:0005516	IEA	calmodulin binding
GO:0005523	TAS	tropomyosin binding
GO:0005829	TAS	cytosol
GO:0005856	TAS	cytoskeleton
GO:0005886	IDA	plasma membrane
GO:0006928	TAS	cellular component movement
GO:0006936	IEA:TAS	muscle contraction
GO:0015629	IDA	actin cytoskeleton
GO:0017022	IEA	myosin binding

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000079391	Cald1-002	protein_coding	Mus_musculus	0	1757
ENSMUST00000115026	Cald1-015	protein_coding	Mus_musculus	0	1740
ENSMUST00000115021	Cald1-001	protein_coding	Mus_musculus	0	1628
ENSMUST00000149009	Cald1-016	nonsense_mediated_decay	Mus_musculus	0	1459
ENSMUST00000031775	Cald1-014	protein_coding	Mus_musculus	0	1208
ENSMUST00000115027	Cald1-006	protein_coding	Mus_musculus	0	1208
ENSMUST00000142512	Cald1-007	protein_coding	Mus_musculus	0	760
ENSMUST00000142716	Cald1-010	protein_coding	Mus_musculus	0	656
ENSMUST00000123823	Cald1-009	protein_coding	Mus_musculus	0	448
ENSMUST00000126181	Cald1-012	protein_coding	Mus_musculus	0	342
ENSMUST00000136907	Cald1-005	protein_coding	Mus_musculus	0	342

Loading