C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 1 open reading frame 85
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000362007 C1orf85-001 ENSG00000198715 9606 - 1:156292688-156295672 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000362007
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000362007 23.553±0.00 7.725±0.00 1.682±0.00 10.821±9.88 2.803±0.00 2.957±2.13 12.361±0.00 6.430±5.77 6.563±5.07 14.433±9.39 46.110±12.18 4.059±1.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_0000CY CIL_0000CY_0002 CGP 1:156282935-156295689

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0004879 IMP ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IDA nucleus
GO:0005764 IDA lysosome
GO:0005829 IDA cytosol
GO:0016021 ISS integral component of membrane
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0030522 IMP intracellular receptor signaling pathway
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177005 0610031J06Rik-001 protein_coding Mus_musculus 0 1007
ENSMUST00000001454 0610031J06Rik-009 protein_coding Mus_musculus 0 276
ENSMUST00000176519 0610031J06Rik-008 protein_coding Mus_musculus 0 276
ENSMUST00000153716 0610031J06Rik-003 retained_intron Mus_musculus 0 276
ENSMUST00000152801 0610031J06Rik-002 retained_intron Mus_musculus 0 222
ENSMUST00000131666 0610031J06Rik-004 nonsense_mediated_decay Mus_musculus 0 206

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