C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000362031 SNX6-002 ENSG00000129515 9606 - 14:34562409-34630183 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000362031
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000362031 11.921±0.00 9.327±0.00 3.092±0.00 7.880±0.43 12.003±1.49 9.323±2.47 8.083±4.69 11.735±9.48 5.346±1.42 8.348±1.51 6.616±0.00 11.745±4.50 14.428±3.97 13.660±2.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RR CIL_0008RR_0001 VISTA 14:33972978-34576380
CIL_0005RF CIL_0005RF_0002 CGP 14:34515929-34630183
CIL_0005RE CIL_0005RE_0002 CGP 14:34561094-34714823

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005622 NAS intracellular
GO:0005634 IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0006886 NAS intracellular protein transport
GO:0007175 NAS negative regulation of epidermal growth factor-activated receptor activity
GO:0030512 IDA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0031410 IEA cytoplasmic vesicle
GO:0031901 IDA early endosome membrane
GO:0034713 IEA type I transforming growth factor beta receptor binding
GO:0035091 IBA:IEA phosphatidylinositol binding
GO:0042147 IMP retrograde transport, endosome to Golgi
GO:0042803 IPI protein homodimerization activity
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005798 Snx6-201 protein_coding Mus_musculus 0 1683

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