C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: H3 histone, family 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366814 H3F3A-003 ENSG00000163041 9606 + 1:226062714-226067269 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R5 CIL_0007R5_0001 VISTA 1:225466688-226068183

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159441 H3f3a-005 retained_intron Mus_musculus 0 678
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 636
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 601
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 0 601
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 484
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 446
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 0 442
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 412
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000183321 Gm26980-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000179046 Gm7426-201 pseudogene Mus_musculus 0 357
ENSMUST00000120136 Gm15763-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000117894 Gm14529-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000116640 Gm14807-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000118617 Gm12513-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000162118 H3f3a-002 protein_coding Mus_musculus 0 307
ENSMUST00000121637 Gm14383-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000159685 H3f3a-004 protein_coding Mus_musculus 0 298
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000118841 Gm14669-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000119660 Gm8757-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000119709 Gm14937-001 processed_pseudogene Mus_musculus 0 191

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