C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366815 H3F3A-001 ENSG00000163041 9606 + 1:226062678-226071999 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366815 135.616±0.00 197.020±0.00 25.254±0.00 87.108±51.75 106.051±27.40 166.506±80.52 65.366±45.13 118.350±70.97 66.432±23.15 182.692±110.72 45.844±23.96 181.407±67.71 229.139±27.54 169.848±60.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R5 CIL_0007R5_0001 VISTA 1:225466688-226068183

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000786 IEA nucleosome
GO:0000788 IDA nuclear nucleosome
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006336 IDA DNA replication-independent nucleosome assembly
GO:0007596 TAS blood coagulation
GO:0030307 IMP positive regulation of cell growth
GO:0031492 IDA nucleosomal DNA binding
GO:0043234 IDA protein complex
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 1616
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 0 1291
ENSMUST00000116640 Gm14807-001 processed_pseudogene Mus_musculus 0 894
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 876
ENSMUST00000159441 H3f3a-005 retained_intron Mus_musculus 0 684
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 654
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 0 654
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 610
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 582
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000171334 Gm4938-201 processed_pseudogene Mus_musculus 0 568
ENSMUST00000121683 Gm12950-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000183321 Gm26980-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000179046 Gm7426-201 pseudogene Mus_musculus 0 521
ENSMUST00000120136 Gm15763-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000117894 Gm14529-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000118436 Gm13349-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000121637 Gm14383-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000119660 Gm8757-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000077630 RP23-249L15.2-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000118617 Gm12513-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000174739 Gm20545-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000162118 H3f3a-002 protein_coding Mus_musculus 0 307
ENSMUST00000159685 H3f3a-004 protein_coding Mus_musculus 0 298
ENSMUST00000137042 Gm15905-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000118841 Gm14669-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000119709 Gm14937-001 processed_pseudogene Mus_musculus 0 191

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