C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptojanin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367122 SYNJ2-201 ENSG00000078269 9606 + 6:158070128-158096463 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENST00000367122
Transcript ID Placenta Testis
ENST00000367122 0.821±0.00 4.168±1.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055D CIL_00055D_0001 CGP 6:157700387-158099176
CIL_00055M CIL_00055M_0001 CGP 6:157981887-158168270

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0046856 IEA phosphatidylinositol dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115791 Synj2-201 protein_coding Mus_musculus 0 1916
ENSMUST00000115790 Synj2-006 protein_coding Mus_musculus 0 1916
ENSMUST00000134767 Synj2-002 nonsense_mediated_decay Mus_musculus 0 1853
ENSMUST00000061091 Synj2-004 protein_coding Mus_musculus 0 1740
ENSMUST00000146009 Synj2-003 protein_coding Mus_musculus 0 1572
ENSMUST00000154114 Synj2-013 protein_coding Mus_musculus 0 1354
ENSMUST00000115785 Synj2-011 protein_coding Mus_musculus 0 1354
ENSMUST00000115784 Synj2-010 protein_coding Mus_musculus 0 1354
ENSMUST00000115787 Synj2-008 protein_coding Mus_musculus 0 1354
ENSMUST00000115788 Synj2-015 protein_coding Mus_musculus 0 1354
ENSMUST00000115789 Synj2-007 protein_coding Mus_musculus 0 1354
ENSMUST00000080283 Synj2-001 protein_coding Mus_musculus 0 1354
ENSMUST00000142409 Synj2-005 protein_coding Mus_musculus 0 898
ENSMUST00000126881 Synj2-014 protein_coding Mus_musculus 0 623

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