C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger and CCCH-type domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367696 RC3H1-003 ENSG00000135870 9606 - 1:173931214-174022297 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastLiverLungOvaryPlacentaTestisENST00000367696
Transcript ID Adipose Adrenal Breast Liver Lung Ovary Placenta Testis
ENST00000367696 1.336±0.00 0.638±0.00 0.584±0.00 1.154±0.00 0.778±0.45 0.950±0.73 0.315±0.00 2.275±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0000956 ISS nuclear-transcribed mRNA catabolic process
GO:0001782 IEA B cell homeostasis
GO:0002634 ISS regulation of germinal center formation
GO:0002635 ISS negative regulation of germinal center formation
GO:0003729 IEA mRNA binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0004842 TAS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0010468 IEA regulation of gene expression
GO:0010494 ISS cytoplasmic stress granule
GO:0010608 ISS posttranscriptional regulation of gene expression
GO:0016567 TAS protein ubiquitination
GO:0030889 ISS negative regulation of B cell proliferation
GO:0033962 ISS cytoplasmic mRNA processing body assembly
GO:0042098 IEA T cell proliferation
GO:0043029 IEA T cell homeostasis
GO:0043488 ISS regulation of mRNA stability
GO:0044822 IDA poly(A) RNA binding
GO:0045623 ISS negative regulation of T-helper cell differentiation
GO:0046007 ISS negative regulation of activated T cell proliferation
GO:0046872 IEA metal ion binding
GO:0048535 IEA lymph node development
GO:0048536 IEA spleen development
GO:0050856 ISS regulation of T cell receptor signaling pathway
GO:0061470 IEA T follicular helper cell differentiation
GO:1901224 IEA positive regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161609 Rc3h1-001 protein_coding Mus_musculus 0 5476
ENSMUST00000035911 Rc3h1-002 protein_coding Mus_musculus 0 4349
ENSMUST00000161708 Rc3h1-003 retained_intron Mus_musculus 0 418
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000007 69

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