C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cellular retinoic acid binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368221 CRABP2-003 ENSG00000143320 9606 - 1:156699756-156705747 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000368221
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000368221 2.783±0.00 1.950±0.00 5.113±0.00 25.283±18.36 3.100±0.00 0.161±0.06 3.944±0.00 1.268±1.14 5.685±0.00 18.998±13.06 44.304±0.00 4.205±1.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005501 TAS retinoid binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006810 IEA transport
GO:0007165 TAS signal transduction
GO:0008544 TAS epidermis development
GO:0016918 IEA retinal binding
GO:0019841 IEA retinol binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005019 Crabp2-001 protein_coding Mus_musculus 0 538
ENSMUST00000163040 Crabp2-002 retained_intron Mus_musculus 0 333

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