C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368285 SEMA4A-001 ENSG00000196189 9606 + 1:156153527-156177744 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyOvaryPlacentaENST00000368285
Transcript ID Bladder Kidney Ovary Placenta
ENST00000368285 0.162±0.00 4.470±0.00 2.258±0.62 0.371±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0002292 IEA T cell differentiation involved in immune response
GO:0004872 IEA receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005886 TAS plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0007409 IEA axonogenesis
GO:0007411 TAS axon guidance
GO:0008360 IEA regulation of cell shape
GO:0010594 IEA regulation of endothelial cell migration
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016525 IEA negative regulation of angiogenesis
GO:0045063 IEA T-helper 1 cell differentiation
GO:0071526 IEA semaphorin-plexin signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029700 Sema4a-001 protein_coding Mus_musculus 0 2213
ENSMUST00000169222 Sema4a-203 protein_coding Mus_musculus 0 2193
ENSMUST00000165898 Sema4a-201 protein_coding Mus_musculus 0 2193
ENSMUST00000166237 Sema4a-202 protein_coding Mus_musculus 0 2193
ENSMUST00000107531 Sema4a-002 protein_coding Mus_musculus 0 1768
ENSMUST00000149145 Sema4a-014 retained_intron Mus_musculus 0 1389
ENSMUST00000184487 Sema4a-008 nonsense_mediated_decay Mus_musculus 0 697
ENSMUST00000127436 Sema4a-004 protein_coding Mus_musculus 0 689
ENSMUST00000147200 Sema4a-005 protein_coding Mus_musculus 0 595
ENSMUST00000185137 Sema4a-007 nonsense_mediated_decay Mus_musculus 0 486
ENSMUST00000184876 Sema4a-009 nonsense_mediated_decay Mus_musculus 0 425
ENSMUST00000135732 Sema4a-006 retained_intron Mus_musculus 0 425
ENSMUST00000135539 Sema4a-015 retained_intron Mus_musculus 3e-33 148
ENSMUST00000156108 Sema4a-016 retained_intron Mus_musculus 3e-33 148

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