C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin XI
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368324 SYT11-001 ENSG00000132718 9606 + 1:155859509-155885199 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368324
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368324 4.388±0.00 4.756±0.00 1.376±0.00 114.333±41.10 3.437±0.32 5.592±4.26 2.745±1.27 1.752±1.64 2.134±1.74 3.036±1.27 0.937±0.33 5.377±3.20 4.365±1.23 4.525±1.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252
CIL_0000CZ CIL_0000CZ_0002 CGP 1:155859509-155911404

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005509 ISS calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005544 ISS calcium-dependent phospholipid binding
GO:0005887 IEA integral component of plasma membrane
GO:0006810 IEA transport
GO:0008021 TAS synaptic vesicle
GO:0030054 IEA cell junction
GO:0046929 TAS negative regulation of neurotransmitter secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090945 Syt11-201 protein_coding Mus_musculus 0 1899
ENSMUST00000107505 Syt11-001 protein_coding Mus_musculus 0 1899
ENSMUST00000183267 Syt11-004 protein_coding Mus_musculus 0 1426
ENSMUST00000107503 Syt11-003 protein_coding Mus_musculus 0 680
ENSMUST00000159181 Shisa4-002 retained_intron Mus_musculus 0.000007 58

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