C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal sequence receptor, delta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370086 SSR4-006 ENSG00000180879 9606 + X:153794639-153798505 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370086
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370086 125.797±0.00 337.682±0.00 7.192±0.00 12.383±0.00 57.359±47.89 71.026±53.58 16.314±8.64 52.026±37.81 169.550±151.74 139.811±127.61 6.769±0.00 126.471±71.65 193.929±80.48 111.914±63.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UV CIL_0001UV_0001 CGP X:153776412-153794523
CIL_0001UU CIL_0001UU_0001 CGP X:153785766-153798505
CIL_0001UT CIL_0001UT_0001 CGP X:153793516-153830565

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005784 NAS Sec61 translocon complex
GO:0006412 TAS translation
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016021 IEA integral component of membrane
GO:0044267 TAS cellular protein metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166518 Ssr4-201 protein_coding Mus_musculus 0 643
ENSMUST00000002090 Ssr4-001 protein_coding Mus_musculus 0 630
ENSMUST00000130738 Ssr4-002 retained_intron Mus_musculus 0 536
ENSMUST00000155552 Ssr4-005 retained_intron Mus_musculus 0 435
ENSMUST00000129239 Ssr4-007 retained_intron Mus_musculus 0 383
ENSMUST00000136544 Ssr4-004 retained_intron Mus_musculus 0 239
ENSMUST00000142829 Ssr4-006 retained_intron Mus_musculus 0 237
ENSMUST00000141721 Ssr4-003 retained_intron Mus_musculus 0 219

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