C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin/nucleoplasmin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370110 NPM3-001 ENSG00000107833 9606 - 10:101781325-101783413 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000370110
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000370110 1.538±0.00 2.032±0.00 3.282±0.00 2.407±0.60 2.221±0.00 1.105±0.72 1.554±0.00 1.344±0.43 1.219±0.02 22.388±7.55 15.804±4.99 5.796±3.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089J CIL_00089J_0001 VISTA 10:101185253-101786853
CIL_000942 CIL_000942_0001 VISTA 10:101206892-101808215
CIL_00099F CIL_00099F_0001 VISTA 10:101467436-102068636
CIL_00099E CIL_00099E_0001 VISTA 10:101480423-102081273
CIL_0005NC CIL_0005NC_0001 CGP 10:101770130-101783413
CIL_0005NB CIL_0005NB_0001 CGP 10:101781325-101818465

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005730 IEA nucleolus
GO:0006364 IEA rRNA processing
GO:0009303 IEA rRNA transcription
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070215 Npm3-001 protein_coding Mus_musculus 0 494
ENSMUST00000119728 Npm3-ps1-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000144165 Npm3-002 retained_intron Mus_musculus 0 348

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