C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370425 HFM1-002 ENSG00000162669 9606 - 1:91260766-91404869 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderOvaryPlacentaTestisENST00000370425
Transcript ID Bladder Ovary Placenta Testis
ENST00000370425 0.014±0.00 0.246±0.10 0.038±0.01 1.504±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000699 CIL_000699_0001 CGP 1:90915298-91404869
CIL_00069J CIL_00069J_0001 CGP 1:91260766-91525764

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000712 IEA resolution of meiotic recombination intermediates
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112690 Hfm1-201 protein_coding Mus_musculus 0 3934
ENSMUST00000117588 Hfm1-001 protein_coding Mus_musculus 0 3932
ENSMUST00000148495 Hfm1-004 nonsense_mediated_decay Mus_musculus 0 1705
ENSMUST00000155171 Hfm1-005 protein_coding Mus_musculus 0 1061
ENSMUST00000148686 Hfm1-002 nonsense_mediated_decay Mus_musculus 0 438
ENSMUST00000134292 Hfm1-003 retained_intron Mus_musculus 0 298

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