C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: guanylate binding protein family, member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370456 GBP6-001 ENSG00000183347 9606 + 1:89364058-89386461 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370456
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370456 0.020±0.00 0.087±0.00 0.065±0.00 0.059±0.01 0.032±0.00 0.026±0.00 0.023±0.00 0.046±0.02 0.375±0.25 0.035±0.00 2.772±2.95 0.008±0.00 0.096±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_0005 CGP 1:89258950-89386461
CIL_00069D CIL_00069D_0001 CGP 1:89364058-89597864

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0006955 ISS immune response
GO:0042742 ISS defense response to bacterium
GO:0070062 IDA extracellular vesicular exosome
GO:0071346 ISS cellular response to interferon-gamma

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065588 Gbp6-202 protein_coding Mus_musculus 0 1260
ENSMUST00000100960 Gbp11-001 polymorphic_pseudogene Mus_musculus 0 1260
ENSMUST00000050011 Gbp6-201 protein_coding Mus_musculus 0 1240
ENSMUST00000100961 Gbp9-202 protein_coding Mus_musculus 0 1234
ENSMUST00000031238 Gbp9-201 protein_coding Mus_musculus 0 1234
ENSMUST00000171587 Gbp11-201 protein_coding Mus_musculus 0 1122
ENSMUST00000045097 Gbp7-201 protein_coding Mus_musculus 0 1074
ENSMUST00000171263 Gbp7-202 protein_coding Mus_musculus 0 1070
ENSMUST00000100962 Gbp4-201 protein_coding Mus_musculus 0 1055
ENSMUST00000106221 Gbp3-003 protein_coding Mus_musculus 0 1048
ENSMUST00000029935 Gbp3-001 protein_coding Mus_musculus 0 1048
ENSMUST00000106222 Gbp3-002 protein_coding Mus_musculus 0 1048
ENSMUST00000112718 Gbp8-202 protein_coding Mus_musculus 0 551
ENSMUST00000031235 Gbp8-201 protein_coding Mus_musculus 0 551
ENSMUST00000142731 Gbp3-006 processed_transcript Mus_musculus 0 521
ENSMUST00000142060 Gbp3-005 protein_coding Mus_musculus 0 399

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