C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase type IVA, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370651 PTP4A1-004 ENSG00000112245 9606 + 6:63572012-63583587 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370651
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370651 9.176±0.00 8.931±0.00 1.362±0.00 12.162±5.94 15.815±0.09 17.201±3.72 3.377±0.25 31.593±12.61 27.692±9.44 19.677±1.08 29.840±14.31 19.756±3.38 10.036±5.99 10.159±3.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000620 CIL_000620_0002 CGP 6:63275951-63583587

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 NAS:IEA protein tyrosine phosphatase activity
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005856 IEA cytoskeleton
GO:0006470 IEA protein dephosphorylation
GO:0007049 IEA cell cycle
GO:0007275 IEA multicellular organismal development
GO:0008138 IEA protein tyrosine/serine/threonine phosphatase activity
GO:0009898 IDA cytoplasmic side of plasma membrane
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0030335 IEA positive regulation of cell migration
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076587 Ptp4a1-005 protein_coding Mus_musculus 0 1868
ENSMUST00000027232 Ptp4a1-001 protein_coding Mus_musculus 0 1868
ENSMUST00000153681 Ptp4a1-003 retained_intron Mus_musculus 0 1572
ENSMUST00000120920 Gm15801-001 processed_pseudogene Mus_musculus 0 821
ENSMUST00000159764 Gm8783-001 processed_pseudogene Mus_musculus 0 821
ENSMUST00000122008 Gm13363-001 processed_pseudogene Mus_musculus 0 815
ENSMUST00000075251 Gm5582-201 processed_pseudogene Mus_musculus 0 809
ENSMUST00000119219 Gm15026-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000124445 Ptp4a1-002 processed_transcript Mus_musculus 0 481
ENSMUST00000130934 Ptp4a1-004 retained_intron Mus_musculus 0 272
ENSDART00000148425 ptp4a1-002 protein_coding Danio_rerio 9.94922e-44 183
ENSDART00000026814 ptp4a1-001 protein_coding Danio_rerio 9.94922e-44 183
ENSDART00000151926 ptp4a1-003 protein_coding Danio_rerio 4.99983e-42 178

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