C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370803 PHF6-001 ENSG00000156531 9606 + X:134373253-134428790 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370803
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370803 2.579±0.00 2.891±0.00 0.456±0.00 2.286±0.00 1.486±0.69 0.813±0.00 0.622±0.32 1.545±0.70 0.701±0.35 1.686±0.00 0.597±0.23 4.820±1.64 1.690±0.89 4.065±1.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JW CIL_0000JW_0001 CGP X:134237047-134428790
CIL_0000GG CIL_0000GG_0002 CGP X:134373253-134520513

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0015631 IPI tubulin binding
GO:0019899 IPI enzyme binding
GO:0042393 IPI histone binding
GO:0042826 IPI histone deacetylase binding
GO:0043021 IPI ribonucleoprotein complex binding
GO:0044822 IDA poly(A) RNA binding
GO:0051219 IPI phosphoprotein binding
GO:0097110 IPI scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078944 Phf6-001 protein_coding Mus_musculus 0 4318
ENSMUST00000154864 Phf6-002 protein_coding Mus_musculus 0 2732
ENSMUST00000101587 Phf6-003 protein_coding Mus_musculus 0 1543
ENSMUST00000177780 Phf6-005 processed_transcript Mus_musculus 0 401
ENSMUST00000179014 Phf6-004 processed_transcript Mus_musculus 0 355

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