C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glypican 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370818 GPC3-001 ENSG00000147257 9606 - X:133535745-133985895 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370818
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370818 48.222±0.00 5.749±0.00 7.306±0.00 0.343±0.07 21.488±12.54 12.048±10.96 2.160±1.38 15.130±15.00 2.201±1.89 52.009±42.40 1.992±0.00 9.311±8.63 207.368±14.84 3.766±1.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GF CIL_0000GF_0002 CGP X:133300103-133985895
CIL_0000SR CIL_0000SR_0001 CGP X:133535745-134246207

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005515 IPI protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0007603 TAS phototransduction, visible light
GO:0009653 TAS anatomical structure morphogenesis
GO:0010466 IEA negative regulation of peptidase activity
GO:0016020 IEA membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0043202 TAS lysosomal lumen
GO:0043395 IEA heparan sulfate proteoglycan binding
GO:0044281 TAS small molecule metabolic process
GO:0060422 IDA peptidyl-dipeptidase inhibitor activity
GO:0070062 IDA extracellular vesicular exosome
GO:0072138 ISS mesenchymal cell proliferation involved in ureteric bud development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069360 Gpc3-001 protein_coding Mus_musculus 0 2634
ENSMUST00000114857 Gpc3-002 protein_coding Mus_musculus 0 1927

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