C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: malignant T cell amplified sequence 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371317 MCTS1-001 ENSG00000232119 9606 + X:120603980-120612479 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371317
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371317 9.447±0.00 8.524±0.00 0.413±0.00 6.189±3.30 7.187±6.24 7.719±4.54 9.215±0.00 8.539±4.98 17.357±0.00 5.065±3.20 4.564±2.27 8.751±6.79 16.382±7.79 5.450±4.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GD CIL_0000GD_0002 CGP X:120524609-120621074
CIL_0000GE CIL_0000GE_0002 CGP X:120594010-120630150

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001731 IDA formation of translation preinitiation complex
GO:0002192 IDA IRES-dependent translational initiation
GO:0003723 IEA RNA binding
GO:0003743 IEA translation initiation factor activity
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007049 IEA cell cycle
GO:0008284 TAS positive regulation of cell proliferation
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0032790 IDA ribosome disassembly
GO:0040008 IEA regulation of growth

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000365 Mcts1-001 protein_coding Mus_musculus 0 1081
ENSMUST00000062148 Mcts2-001 protein_coding Mus_musculus 0 756
ENSMUST00000134573 Mcts1-002 processed_transcript Mus_musculus 0 617
ENSMUST00000140204 Mcts1-003 processed_transcript Mus_musculus 0 460
ENSMUST00000133128 Mcts1-004 processed_transcript Mus_musculus 0 340
ENSMUST00000148938 Mcts1-005 processed_transcript Mus_musculus 0 327
ENSMUST00000120131 Gm12837-001 processed_pseudogene Mus_musculus 0 322

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