C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single stranded DNA binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371320 SSBP3-002 ENSG00000157216 9606 - 1:54226632-54406419 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085J CIL_00085J_0001 VISTA 1:54159373-54763153
CIL_0006W6 CIL_0006W6_0002 CGP 1:54184041-54413479
CIL_00005A CIL_00005A_0002 CGP 1:54225432-54639192

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006461 IEA protein complex assembly
GO:0008284 IEA positive regulation of cell proliferation
GO:0021501 IEA prechordal plate formation
GO:0021547 IEA midbrain-hindbrain boundary initiation
GO:0043234 IEA protein complex
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060322 IEA head development
GO:0060323 IEA head morphogenesis
GO:2000744 IEA positive regulation of anterior head development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030367 Ssbp3-001 protein_coding Mus_musculus 0 2671
ENSMUST00000146659 Ssbp3-003 processed_transcript Mus_musculus 0 2126
ENSMUST00000124936 Ssbp3-007 processed_transcript Mus_musculus 0 1498
ENSMUST00000141963 Ssbp3-004 processed_transcript Mus_musculus 0 1498
ENSMUST00000072753 Ssbp3-002 protein_coding Mus_musculus 0 1498
ENSMUST00000097934 Ssbp3-006 protein_coding Mus_musculus 0 1351
ENSMUST00000149926 Ssbp3-017 protein_coding Mus_musculus 0 974
ENSMUST00000150915 Ssbp3-005 processed_transcript Mus_musculus 0 970
ENSMUST00000133827 Ssbp3-014 processed_transcript Mus_musculus 0 941
ENSMUST00000138475 Ssbp3-008 processed_transcript Mus_musculus 0 846
ENSMUST00000132506 Ssbp3-011 processed_transcript Mus_musculus 0 610
ENSMUST00000136487 Ssbp3-016 processed_transcript Mus_musculus 0 564
ENSMUST00000137786 Ssbp3-012 processed_transcript Mus_musculus 0 344
ENSMUST00000131440 Ssbp3-010 protein_coding Mus_musculus 0 313
ENSMUST00000131111 Ssbp3-013 processed_transcript Mus_musculus 0 239
ENSMUST00000148842 Ssbp3-009 processed_transcript Mus_musculus 0 228
ENSMUST00000156288 Ssbp3-015 processed_transcript Mus_musculus 0 219

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