C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cullin 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371322 CUL4B-003 ENSG00000158290 9606 - X:120524609-120560700 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371322
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371322 11.143±0.00 7.854±0.00 0.550±0.00 3.702±0.95 4.705±2.75 8.755±5.17 2.630±0.00 7.905±0.00 3.318±2.42 4.309±2.37 0.833±0.78 5.644±1.77 3.188±1.34 15.359±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016X CIL_00016X_0002 CGP X:120427827-120575794
CIL_0000GD CIL_0000GD_0002 CGP X:120524609-120621074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003684 IDA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007049 NAS cell cycle
GO:0031461 IEA cullin-RING ubiquitin ligase complex
GO:0031465 IDA Cul4B-RING E3 ubiquitin ligase complex
GO:0031625 IEA ubiquitin protein ligase binding
GO:0035518 IDA histone H2A monoubiquitination
GO:0070062 IDA extracellular vesicular exosome
GO:0070914 IDA UV-damage excision repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016681 Cul4b-004 protein_coding Mus_musculus 0 4250
ENSMUST00000115118 Cul4b-001 protein_coding Mus_musculus 0 4126
ENSMUST00000050083 Cul4b-003 protein_coding Mus_musculus 0 3781
ENSMUST00000147129 Cul4b-002 nonsense_mediated_decay Mus_musculus 0 2734

Loading