C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371764 DDX27-001 ENSG00000124228 9606 + 20:49219347-49244077 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainOvaryTestisENST00000371764
Transcript ID Bladder Brain Ovary Testis
ENST00000371764 1.880±0.00 2.073±0.00 5.754±0.00 20.831±1.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T2 CIL_0001T2_0001 CGP 20:49113339-49244077
CIL_000279 CIL_000279_0001 CGP 20:49219295-49278426

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018143 Ddx27-001 protein_coding Mus_musculus 0 2789
ENSMUST00000150571 Ddx27-002 protein_coding Mus_musculus 0 987
ENSDART00000128065 ddx27-001 protein_coding Danio_rerio 0 737
ENSMUST00000176066 Ddx27-006 protein_coding Mus_musculus 0 531
ENSMUST00000138969 Ddx27-004 retained_intron Mus_musculus 0 370
ENSMUST00000126409 Ddx27-003 retained_intron Mus_musculus 0 261
ENSMUST00000127468 Ddx27-005 retained_intron Mus_musculus 6.02558e-44 183

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