C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372209 RPS8-003 ENSG00000142937 9606 + 1:44775573-44778779 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0001 VISTA 1:44224152-44825477
CIL_000638 CIL_000638_0002 CGP 1:44775251-44787705

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005737 IDA cytoplasm
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102696 Rps8-001 protein_coding Mus_musculus 0 549
ENSMUST00000118709 Rps8-ps2-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000121572 Gm14438-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000092523 Gm10712-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000120833 Gm14414-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000140687 Gm15501-001 transcribed_processed_pseudogene Mus_musculus 0 538
ENSMUST00000133910 Gm15501-002 processed_transcript Mus_musculus 0 538
ENSMUST00000180940 Gm11353-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000122418 Gm14323-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000186115 RP23-393D20.3-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000118252 Gm5687-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000189312 RP24-160J12.4-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000127037 Rps8-004 retained_intron Mus_musculus 0 340
ENSMUST00000137423 Rps8-005 retained_intron Mus_musculus 0 298
ENSMUST00000144051 Rps8-007 retained_intron Mus_musculus 0 254
ENSMUST00000140226 Rps8-002 retained_intron Mus_musculus 0 254
ENSMUST00000191349 RP24-160E3.1-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000141219 Rps8-006 retained_intron Mus_musculus 0 219
ENSMUST00000172445 Rps8-ps1-201 processed_pseudogene Mus_musculus 1.4013e-45 187
ENSMUST00000085711 Gm5121-201 processed_pseudogene Mus_musculus 1.4013e-45 187

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