C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDX1 C-terminal inhibiting factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372409 PCIF1-001 ENSG00000100982 9606 + 20:45934628-45948023 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372409
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372409 15.841±0.00 23.278±0.00 8.675±7.29 7.809±6.33 6.567±6.18 6.240±0.00 6.785±6.29 2.699±1.88 11.611±10.36 15.243±13.76 24.494±13.77 15.183±6.24 10.991±6.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006IV CIL_0006IV_0002 CGP 20:45898621-45948023
CIL_0006GO CIL_0006GO_0001 CGP 20:45934628-45972172

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0010923 IDA negative regulation of phosphatase activity
GO:0015630 IDA microtubule cytoskeleton
GO:0045171 IDA intercellular bridge

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041643 Pcif1-001 protein_coding Mus_musculus 0 3147
ENSMUST00000145327 Pcif1-002 retained_intron Mus_musculus 0 388
ENSMUST00000130213 Pcif1-003 retained_intron Mus_musculus 0 375

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