C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 1 open reading frame 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372525 C1orf50-001 ENSG00000164008 9606 + 1:42767269-42775747 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372525
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372525 4.217±0.00 4.340±0.00 0.341±0.00 2.693±1.32 2.221±0.71 3.268±2.28 2.350±1.49 2.816±1.77 2.862±1.59 1.275±0.97 4.334±1.19 3.188±2.73 4.149±1.77 7.671±3.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0001 VISTA 1:42456139-43057783
CIL_0005B2 CIL_0005B2_0002 CGP 1:42746335-42794493
CIL_0008N2 CIL_0008N2_0001 VISTA 1:42758169-43359178

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000141112 AU022252-002 protein_coding Mus_musculus 0 678
ENSMUST00000132778 AU022252-001 processed_transcript Mus_musculus 0 675
ENSMUST00000144309 AU022252-003 processed_transcript Mus_musculus 0 525
ENSMUST00000046260 AU022252-004 processed_transcript Mus_musculus 0 420

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