C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TruB pseudouridine (psi) synthase family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372890 TRUB2-001 ENSG00000167112 9606 - 9:128309103-128322742 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372890
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372890 6.927±0.00 13.879±0.00 13.171±7.87 5.289±4.50 4.361±3.04 7.709±4.05 9.296±7.84 9.943±8.81 2.396±1.64 5.669±0.00 13.996±8.85 13.489±4.94 11.335±7.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E8 CIL_0007E8_0001 CGP 9:128309103-128334072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0006396 IEA RNA processing
GO:0008033 IEA tRNA processing
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048044 Trub2-001 protein_coding Mus_musculus 0 830
ENSMUST00000156846 Trub2-003 nonsense_mediated_decay Mus_musculus 0 521
ENSMUST00000113807 Trub2-002 protein_coding Mus_musculus 0 494
ENSMUST00000177467 Trub2-008 protein_coding Mus_musculus 0 492
ENSMUST00000177133 Trub2-010 nonsense_mediated_decay Mus_musculus 0 322
ENSMUST00000176167 Trub2-007 retained_intron Mus_musculus 0 311
ENSMUST00000176312 Trub2-009 nonsense_mediated_decay Mus_musculus 4.06377e-44 183
ENSMUST00000148120 Trub2-005 retained_intron Mus_musculus 1.99965e-42 178

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