C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain and WD repeat domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373275 BRWD3-001 ENSG00000165288 9606 - X:80670854-80809688 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000373275
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000373275 1.060±0.00 0.683±0.00 0.570±0.00 0.553±0.00 0.800±0.00 1.661±0.71 0.354±0.22 1.276±0.00 0.787±0.31 2.120±0.41 1.192±0.53 0.554±0.18 2.404±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KC CIL_0003KC_0001 CGP X:80670854-81201942

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0007010 IMP cytoskeleton organization
GO:0008360 IMP regulation of cell shape

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150434 Brwd3-001 protein_coding Mus_musculus 0 10350
ENSMUST00000144521 Brwd3-003 nonsense_mediated_decay Mus_musculus 0 6355
ENSMUST00000041866 Brwd3-002 nonsense_mediated_decay Mus_musculus 0 6355
ENSMUST00000134434 Brwd3-005 retained_intron Mus_musculus 0 1526
ENSMUST00000101283 Brwd3-004 protein_coding Mus_musculus 0 1022
ENSMUST00000186089 Phip-012 nonsense_mediated_decay Mus_musculus 0.00000000004 77
ENSMUST00000188868 Phip-010 retained_intron Mus_musculus 0.00000000004 77
ENSMUST00000034787 Phip-003 protein_coding Mus_musculus 0.00000000004 77
ENSMUST00000190936 Phip-001 retained_intron Mus_musculus 0.000000002 71

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