C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high density lipoprotein binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373292 HDLBP-004 ENSG00000115677 9606 - 2:241229224-241262792 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleTestisENST00000373292
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000373292 16.721±0.00 12.234±0.00 23.326±0.00 45.312±21.84 20.102±8.82 32.163±0.00 19.405±0.00 20.994±0.00 47.131±32.03 80.744±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000473 CIL_000473_0001 CGP 2:241188509-241317061
CIL_0002JH CIL_0002JH_0001 CGP 2:241227264-241354027

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186164 Hdlbp-004 protein_coding Mus_musculus 0 3367
ENSMUST00000042498 Hdlbp-003 protein_coding Mus_musculus 0 2684
ENSMUST00000170883 Hdlbp-001 protein_coding Mus_musculus 0 2684
ENSDART00000011863 hdlbpa-001 protein_coding Danio_rerio 0 968
ENSMUST00000189951 Hdlbp-002 retained_intron Mus_musculus 0 689
ENSMUST00000190321 Hdlbp-007 protein_coding Mus_musculus 0 496
ENSDART00000055771 hdlbpa-201 protein_coding Danio_rerio 0 254

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