C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNF receptor-associated factor 3 interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373327 TRAF3IP1-001 ENSG00000204104 9606 + 2:238320441-238400900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverPlacentaTestisENST00000373327
Transcript ID Heart Liver Placenta Testis
ENST00000373327 0.383±0.00 0.317±0.00 0.206±0.00 5.286±1.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NE CIL_0003NE_0001 CGP 2:238244038-238400900
CIL_0004UF CIL_0004UF_0002 CGP 2:238320441-238452250

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005813 IBA centrosome
GO:0005929 IBA cilium
GO:0005930 IEA axoneme
GO:0008017 IEA microtubule binding
GO:0021532 IEA neural tube patterning
GO:0030992 IBA intraciliary transport particle B
GO:0031076 IEA embryonic camera-type eye development
GO:0032688 IEA negative regulation of interferon-beta production
GO:0035050 IEA embryonic heart tube development
GO:0036064 IEA ciliary basal body
GO:0036342 IEA post-anal tail morphogenesis
GO:0042073 IBA intraciliary transport
GO:0042384 IBA cilium assembly
GO:0042733 IEA embryonic digit morphogenesis
GO:0050687 IEA negative regulation of defense response to virus
GO:1901621 IEA negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000189341 Traf3ip1-003 protein_coding Mus_musculus 0 837
ENSMUST00000047242 Traf3ip1-001 protein_coding Mus_musculus 0 811
ENSMUST00000187588 Traf3ip1-002 retained_intron Mus_musculus 0 809

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