C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polyhomeotic homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373418 PHC2-003 ENSG00000134686 9606 - 1:33323626-33349885 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373418
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373418 43.500±0.00 34.601±0.00 11.086±9.77 12.818±11.79 17.826±16.08 16.871±15.65 86.926±0.00 20.596±19.94 100.577±0.00 49.582±45.91 26.300±16.95 39.917±22.22 30.448±11.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097K CIL_00097K_0001 VISTA 1:32956893-33558359
CIL_0008F1 CIL_0008F1_0001 VISTA 1:33063188-33665346

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106079 Phc2-004 protein_coding Mus_musculus 0 2290
ENSMUST00000030588 Phc2-201 protein_coding Mus_musculus 0 2076
ENSMUST00000106080 Phc2-001 protein_coding Mus_musculus 0 2076
ENSMUST00000143632 Phc2-005 nonsense_mediated_decay Mus_musculus 0 1555
ENSMUST00000147572 Phc2-008 protein_coding Mus_musculus 0 1003
ENSMUST00000134421 Phc2-009 protein_coding Mus_musculus 0 802
ENSMUST00000138445 Phc2-010 nonsense_mediated_decay Mus_musculus 0 800
ENSMUST00000133439 Phc2-007 protein_coding Mus_musculus 0 394
ENSMUST00000120946 Phc2-011 protein_coding Mus_musculus 0 226

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